Tangent Phylogenetic PCA

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Phylogenetic PCA (p-PCA) is a version of PCA for observations that are leaf nodes of a phylogenetic tree. P-PCA accounts for the fact that such observations are not independent, due to shared evolutionary history. The method works on Euclidean data, but in evolutionary biology there is a need for applying it to data on manifolds, particularly shapes. We provide a generalization of p-PCA to data lying on Riemannian manifolds, called Tangent p-PCA. Tangent p-PCA thus makes it possible to perform dimension reduction on a data set of shapes, taking into account both the non-linear structure of the shape space as well as phylogenetic covariance. We show simulation results on the sphere, demonstrating well-behaved error distributions and fast convergence of estimators. Furthermore, we apply the method to a data set of mammal jaws, represented as points on a landmark manifold equipped with the LDDMM metric.

Original languageEnglish
Title of host publicationImage Analysis - 23rd Scandinavian Conference, SCIA 2023, Proceedings
EditorsRikke Gade, Michael Felsberg, Joni-Kristian Kämäräinen
PublisherSpringer
Publication date2023
Pages77-90
ISBN (Print)9783031314377
DOIs
Publication statusPublished - 2023
Event23nd Scandinavian Conference on Image Analysis, SCIA 2023 - Lapland, Finland
Duration: 18 Apr 202321 Apr 2023

Conference

Conference23nd Scandinavian Conference on Image Analysis, SCIA 2023
LandFinland
ByLapland
Periode18/04/202321/04/2023
SeriesLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume13886 LNCS
ISSN0302-9743

Bibliographical note

Publisher Copyright:
© 2023, The Author(s), under exclusive license to Springer Nature Switzerland AG.

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