JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Standard

JASPAR 2014 : an extensively expanded and updated open-access database of transcription factor binding profiles. / Mathelier, Anthony; Zhao, Xiaobei; Zhang, Allen W.; Parcy, François; Worsley-Hunt, Rebecca; Arenillas, David J.; Buchman, Sorana; Chen, Chih-yu; Chou, Alice; Ienasescu, Hans-Ioan; Lim, Jonathan; Shyr, Casper; Tan, Ge; Zhou, Michelle; Lenhard, Boris; Sandelin, Albin Gustav; Wasserman, Wyeth W.

I: Nucleic Acids Research, Bind 42, 2014, s. D142-D147.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

Mathelier, A, Zhao, X, Zhang, AW, Parcy, F, Worsley-Hunt, R, Arenillas, DJ, Buchman, S, Chen, C, Chou, A, Ienasescu, H-I, Lim, J, Shyr, C, Tan, G, Zhou, M, Lenhard, B, Sandelin, AG & Wasserman, WW 2014, 'JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles', Nucleic Acids Research, bind 42, s. D142-D147. https://doi.org/10.1093/nar/gkt997

APA

Mathelier, A., Zhao, X., Zhang, A. W., Parcy, F., Worsley-Hunt, R., Arenillas, D. J., Buchman, S., Chen, C., Chou, A., Ienasescu, H-I., Lim, J., Shyr, C., Tan, G., Zhou, M., Lenhard, B., Sandelin, A. G., & Wasserman, W. W. (2014). JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles. Nucleic Acids Research, 42, D142-D147. https://doi.org/10.1093/nar/gkt997

Vancouver

Mathelier A, Zhao X, Zhang AW, Parcy F, Worsley-Hunt R, Arenillas DJ o.a. JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles. Nucleic Acids Research. 2014;42:D142-D147. https://doi.org/10.1093/nar/gkt997

Author

Mathelier, Anthony ; Zhao, Xiaobei ; Zhang, Allen W. ; Parcy, François ; Worsley-Hunt, Rebecca ; Arenillas, David J. ; Buchman, Sorana ; Chen, Chih-yu ; Chou, Alice ; Ienasescu, Hans-Ioan ; Lim, Jonathan ; Shyr, Casper ; Tan, Ge ; Zhou, Michelle ; Lenhard, Boris ; Sandelin, Albin Gustav ; Wasserman, Wyeth W. / JASPAR 2014 : an extensively expanded and updated open-access database of transcription factor binding profiles. I: Nucleic Acids Research. 2014 ; Bind 42. s. D142-D147.

Bibtex

@article{1cf5c7d41d714ae58a0cd6c52373f4c4,
title = "JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles",
abstract = "JASPAR (http://jaspar.genereg.net) is the largest open-access database of matrix-based nucleotide profiles describing the binding preference of transcription factors from multiple species. The fifth major release greatly expands the heart of JASPAR-the JASPAR CORE subcollection, which contains curated, non-redundant profiles-with 135 new curated profiles (74 in vertebrates, 8 in Drosophila melanogaster, 10 in Caenorhabditis elegans and 43 in Arabidopsis thaliana; a 30% increase in total) and 43 older updated profiles (36 in vertebrates, 3 in D. melanogaster and 4 in A. thaliana; a 9% update in total). The new and updated profiles are mainly derived from published chromatin immunoprecipitation-seq experimental datasets. In addition, the web interface has been enhanced with advanced capabilities in browsing, searching and subsetting. Finally, the new JASPAR release is accompanied by a new BioPython package, a new R tool package and a new R/Bioconductor data package to facilitate access for both manual and automated methods.",
keywords = "Animals, Arabidopsis, Binding Sites, Caenorhabditis elegans, Databases, Genetic, Drosophila melanogaster, Humans, Internet, Mice, Position-Specific Scoring Matrices, Regulatory Elements, Transcriptional, Transcription Factors",
author = "Anthony Mathelier and Xiaobei Zhao and Zhang, {Allen W.} and Fran{\c c}ois Parcy and Rebecca Worsley-Hunt and Arenillas, {David J.} and Sorana Buchman and Chih-yu Chen and Alice Chou and Hans-Ioan Ienasescu and Jonathan Lim and Casper Shyr and Ge Tan and Michelle Zhou and Boris Lenhard and Sandelin, {Albin Gustav} and Wasserman, {Wyeth W}",
year = "2014",
doi = "10.1093/nar/gkt997",
language = "English",
volume = "42",
pages = "D142--D147",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",

}

RIS

TY - JOUR

T1 - JASPAR 2014

T2 - an extensively expanded and updated open-access database of transcription factor binding profiles

AU - Mathelier, Anthony

AU - Zhao, Xiaobei

AU - Zhang, Allen W.

AU - Parcy, François

AU - Worsley-Hunt, Rebecca

AU - Arenillas, David J.

AU - Buchman, Sorana

AU - Chen, Chih-yu

AU - Chou, Alice

AU - Ienasescu, Hans-Ioan

AU - Lim, Jonathan

AU - Shyr, Casper

AU - Tan, Ge

AU - Zhou, Michelle

AU - Lenhard, Boris

AU - Sandelin, Albin Gustav

AU - Wasserman, Wyeth W

PY - 2014

Y1 - 2014

N2 - JASPAR (http://jaspar.genereg.net) is the largest open-access database of matrix-based nucleotide profiles describing the binding preference of transcription factors from multiple species. The fifth major release greatly expands the heart of JASPAR-the JASPAR CORE subcollection, which contains curated, non-redundant profiles-with 135 new curated profiles (74 in vertebrates, 8 in Drosophila melanogaster, 10 in Caenorhabditis elegans and 43 in Arabidopsis thaliana; a 30% increase in total) and 43 older updated profiles (36 in vertebrates, 3 in D. melanogaster and 4 in A. thaliana; a 9% update in total). The new and updated profiles are mainly derived from published chromatin immunoprecipitation-seq experimental datasets. In addition, the web interface has been enhanced with advanced capabilities in browsing, searching and subsetting. Finally, the new JASPAR release is accompanied by a new BioPython package, a new R tool package and a new R/Bioconductor data package to facilitate access for both manual and automated methods.

AB - JASPAR (http://jaspar.genereg.net) is the largest open-access database of matrix-based nucleotide profiles describing the binding preference of transcription factors from multiple species. The fifth major release greatly expands the heart of JASPAR-the JASPAR CORE subcollection, which contains curated, non-redundant profiles-with 135 new curated profiles (74 in vertebrates, 8 in Drosophila melanogaster, 10 in Caenorhabditis elegans and 43 in Arabidopsis thaliana; a 30% increase in total) and 43 older updated profiles (36 in vertebrates, 3 in D. melanogaster and 4 in A. thaliana; a 9% update in total). The new and updated profiles are mainly derived from published chromatin immunoprecipitation-seq experimental datasets. In addition, the web interface has been enhanced with advanced capabilities in browsing, searching and subsetting. Finally, the new JASPAR release is accompanied by a new BioPython package, a new R tool package and a new R/Bioconductor data package to facilitate access for both manual and automated methods.

KW - Animals

KW - Arabidopsis

KW - Binding Sites

KW - Caenorhabditis elegans

KW - Databases, Genetic

KW - Drosophila melanogaster

KW - Humans

KW - Internet

KW - Mice

KW - Position-Specific Scoring Matrices

KW - Regulatory Elements, Transcriptional

KW - Transcription Factors

U2 - 10.1093/nar/gkt997

DO - 10.1093/nar/gkt997

M3 - Journal article

C2 - 24194598

VL - 42

SP - D142-D147

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

ER -

ID: 108150762