Marleen de Bruijne

Marleen de Bruijne

Professor

ORCID: 0000-0002-6328-902X

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  1. Published

    Distribution, size, shape, growth potential and extent of abdominal aortic calcified deposits predict mortality in postmenopausal women

    Nielsen, Mads, Ganz, Melanie, Lauze, Francois Bernard, Pettersen, P. C., de Bruijne, Marleen, Clarkson, T. B., Dam, E. B., Christiansen, C. & Karsdal, M. A., 2010, In: BMC Cardiovascular Disorders. 10, 10 p., 56.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Quantitative imaging biomarkers in neurologic disease: population study perspective

    Niessen, W. J., Vrooman, H. A., de Boer, R., van der Lijn, F., Achterberg, H. C., Koek, M., Klein, S., van der Lugt, A., de Bruijne, Marleen, Ikram, M. A. & Vernooij, M. W., 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI). IEEE, p. 911 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

  3. Published

    Feature Learning Based on Visual Similarity Triplets in Medical Image Analysis: A Case Study of Emphysema in Chest CT Scans

    Nyboe Ørting, S., Petersen, Jens, Cheplygina, V., Thomsen, L. H., Wille, M. M. W. & de Bruijne, Marleen, 2018, Intravascular Imaging and Computer Assisted Stenting and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis: 7th Joint International Workshop, CVII-STENT 2018 and Third International Workshop, LABELS 2018 Held in Conjunction with MICCAI 2018 Granada, Spain, September 16, 2018 Proceedings. Stoyanov, D., Taylor, Z., Balocco, S. & Sznitman, R. (eds.). Springer, p. 140-149 Chapter 16. (Lecture Notes in Computer Science, Vol. 11043).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  4. Published

    Learning to quantify emphysema extent: What labels do we need?

    Orting, S. N., Petersen, Jens, Thomsen, L. H., Winkler Wille, M. M. & de Bruijne, Marleen, 2020, In: IEEE Journal of Biomedical and Health Informatics. 24, 4, p. 1149 -1159

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Detecting emphysema with multiple instance learning

    Orting, S. N., Petersen, Jens, Thomsen, L. H., Wille, M. M. W. & de Bruijne, Marleen, 23 May 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE, p. 510-513

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  6. Published

    Automatic airway-artery analysis on lung CT to quantify airway wall thickening and bronchiectasis

    Perez-Rovira, A., Kuo, W., Petersen, Jens, Tiddens, H. A. W. M. & de Bruijne, Marleen, 2016, In: Medical Physics. 43, 10, p. 5736-5744 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Automated quantification of bronchiectasis, airway wall thickening and lumen tapering in chest CT

    Perez-Rovira, A., Kuo, W., Petersen, Jens, A.W.M. Tiddens, H. & de Bruijne, Marleen, 2015. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  8. Published

    Manual airway labeling has limited reproducibility

    Petersen, Jens, Feragen, A., Thomsen, L. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2013. 10 p.

    Research output: Contribution to conference › Poster › Research › peer-review

  9. Published

    Optimal graph based segmentation using flow lines with application to airway wall segmentation

    Petersen, Jens, Nielsen, Mads, Lo, P. C. P., Saghir, Z., Dirksen, A. & de Bruijne, Marleen, 2011, Information Processing in Medical Imaging: 22nd International Conference, IPMI 2011, Kloster Irsee, Germany, July 3-8, 2011. Proceedings. Székely, G. & Hahn, H. K. (eds.). Springer, p. 49-60 12 p. (Lecture notes in computer science, Vol. 6801).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  10. Published

    Optimal surface segmentation using flow lines to quantify airway abnormalities in chronic obstructive pulmonary disease

    Petersen, Jens, Nielsen, Mads, Lo, P. C. P., Nordenmark, L. H., Pedersen, J. J. H., Wille, M. M. W., Dirksen, A. & de Bruijne, Marleen, 2014, In: Medical Image Analysis. 18, 3, p. 531-541 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    An automatic system for segmentation, matching, anatomical labeling and measurement of airways from CT images

    Petersen, Jens, Feragen, A., Owen, M., Lo, P., Wille, M. M. W., Thomsen, L. H., Dirksen, A. & de Bruijne, Marleen, 2013. 1 p.

    Research output: Contribution to conference › Poster › Research › peer-review

  12. Published

    Graph cut-based segmentation

    Petersen, Jens, Oguz, I. & de Bruijne, Marleen, 2023, Medical Image Analysis. Academic Press, p. 247-273

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  13. Published

    Effect of inspiration on airway dimensions measured in maximal inspiration CT images of subjects without airflow limitation

    Petersen, Jens, Wille, M. M. W., Raket, L. L., Feragen, A., Pedersen, J. H., Nielsen, Mads, Dirksen, A. & de Bruijne, Marleen, 2014, In: European Radiology. 24, 9, p. 2319-2325 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Quantitative airway analysis in longitudinal studies using groupwise registration and 4D optimal surfaces

    Petersen, Jens, Modat, M., Cardoso, M. J., Dirksen, A., Ourselin, S. & de Bruijne, Marleen, 2013, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2013: 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part II. Mori, K., Sakuma, I., Sato, Y., Barillot, C. & Navab, N. (eds.). Springer, Vol. 2. p. 287-294 8 p. (Lecture notes in computer science, Vol. 8150).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  15. Published

    Quantitative analysis of airway abnormalities in CT

    Petersen, Jens, Lo, P. C. P., Nielsen, Mads, Edula, G., Ashraf, H., Dirksen, A. & de Bruijne, Marleen, 2010, Medical Imaging 2010: computer-aided Diagnosis. Karssemeijer, N. & Summers, R. M. (eds.). SPIE - International Society for Optical Engineering, 12 p. 76241S. (Progress in Biomedical Optics and Imaging; No. 34, Vol. 11).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  16. Published

    Increasing Accuracy of Optimal Surfaces Using Min-marginal Energies

    Petersen, Jens, Arias-Lorza, A. M., Selvan, Raghav, Bos, D., van der Lugt, A., Pedersen, J. H., Nielsen, Mads & de Bruijne, Marleen, 1 Jan 2019, In: IEEE Transactions on Medical Imaging. 38, 7, p. 1559-1568 8599009.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Longitudinal analysis of airways using registration

    Petersen, Jens, Gorbunova, V., Nielsen, Mads, Dirksen, A., Lo, P. C. P. & de Bruijne, Marleen, 2011, The Fourth International Workshop on Pulmonary Image Analysis. Beichel, R., de Bruijne, M., van Ginneken, B., Kabus, S., Kiraly, A., Kuhnigk, J-M., McClelland, J., Mori, K., van Rikxoort, E. & Rit, S. (eds.). CreateSpace Independent Publishing Platform , p. 11-22 12 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  18. Published

    The effect of inspiration on airway dimensions measured in CT images from the Danish Lung Cancer Screening Trial

    Petersen, Jens, Wille, M., Thomsen, L., Feragen, A., Dirksen, A. & de Bruijne, Marleen, 2013, In: Insights into Imaging. 4, Supplement 1, p. 183 1 p., B-0163.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  19. Published

    Method of estimating risk of future fracture in vertebrae of spine used in medical field, involves computing different curvature values to obtain value representative of degree of irregularity of curvature of spine

    Pettersen, P., de Bruijne, Marleen, Christiansen, C. & Tanko, L. B., 2008, IPC No. G06F-019/00, Patent No. WO2008116918-A1, 2 Oct 2008

    Research output: Patent

  20. Published

    A Computer-based Measure of Irregularity in Vertebral Alignment is a BMD-independent Predictor of Fracture Risk in Postmenopausal Women

    Pettersen, P., de Bruijne, Marleen, Chen, J., He, Q., Christiansen, C. & Tankó, L. B., 2007, In: Osteoporosis International. 18, 11, p. 1525-1530

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Submitted

    Vertebral fracture prediction

    Pettersen, P., de Bruijne, Marleen & Tanko, L., 2007, (Submitted) 1 Mar 2007

    Research output: Patent

  22. Published

    Vertebral Fracture Prediction

    Pettersen, P., de Bruijne, Marleen, Christiansen, C. & Tanko, L. B., 2008, IPC No. G06F 19/00, Patent No. WO/2008/116918, 2 Oct 2008

    Research output: Patent

  23. Published

    Computer based measure of kyphosis predicts fractures in the thoracic spine of postmenopausal women

    Pettersen, P. C., de Bruijne, Marleen, Chen, J., He, Q., Tankó, L. B. & Christiansen, C., 2007, Abstracts of the 29th annual meeting of the American society for bone and mineral research. ASBMR, 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

  24. Published

    A computer-based measure of irregularity in the alignment of vertebrae in the lumbar spine is a BMD-independent predictor of fracture risk in postmenopausal women

    Pettersen, P. C., de Bruijne, Marleen, Chen, J., He, Q., Christiansen, C. & Tankó, L. B., 2007, Abstracts of the 34th European symposium on calcified Tissues. Springer, p. S142 1 p. (Calcified Tissue International; No. Vol. 80 (suppl. 1)).

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

  25. Published

    Automatic emphysema detection using weakly labeled HRCT lung images

    Pino Peña, I., Cheplygina, V., Paschaloudi, S., Vuust, M., Carl, J., Weinreich, U. M., Østergaard, L. R. & de Bruijne, Marleen, 2018, In: PLoS ONE. 13, 10, p. 1-16 e0205397.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Improved tissue segmentation by including an MR acquisition model

    Poot, D. H. J., de Bruijne, Marleen, Vernooij, M. W., Ikram, M. A. & Niessen, W. J., 2011, Multimodal Brain Image Analysis: First International Workshop, MBIA 2011, Held in Conjunction with MICCAI 2011, Toronto, Canada, September 18, 2011. Proceedings. Liu, T., Shen, D., Ibanez, L. & Tao, X. (eds.). Springer, p. 152-159 8 p. (Lecture notes in computer science, Vol. 7012).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  27. Published

    Extraction of Airways with Probabilistic State-Space Models and Bayesian Smoothing

    Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2017, Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics: First International Workshop, GRAIL 2017, 6th International Workshop, MFCA 2017, and Third International Workshop, MICGen 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10–14, 2017, Proceedings. Cardoso, M. J., Arbel, T., Ferrante, E., Pennec, X., Dalca, A. V., Parisot, S., Joshi, S., Batmanghelich, N. K., Sotiras, A., Nielsen, M., Sabuncu, M. R., Fletcher, T., Shen, L., Durrleman, S. & Sommer, S. (eds.). Springer, p. 53-63 (Lecture notes in computer science, Vol. 10551).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  28. Published

    Extraction of airway trees using multiple hypothesis tracking and template matching

    Selvan, Raghav, Petersen, Jens, Pedersen, J. J. H. & de Bruijne, Marleen, 2016, The Sixth International Workshop on Pulmonary Image Analysis: Athens, Greece - October 21, 2016. Beichel, R. R., Farahani, K., Jacobs, C., Kabus, S., Kiraly, A. P., Kuhnigk, J-M., McClelland, J. R., Mori, K., Petersen, J. & Rit, S. (eds.). Create Space Independent Publishing Platform, p. 43-54 12 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  29. Published

    Extraction of Airways using Graph Neural Networks

    Selvan, Raghav, Kipf, T., Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018. 3 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  30. Published

    Mean Field Network Based Graph Refinement with Application to Airway Tree Extraction

    Selvan, Raghav, Welling, M., Pedersen, J. J. H., Petersen, Jens & de Bruijne, Marleen, 2018, Medical Image Computingand Computer AssistedIntervention – MICCAI 2018: 21st International Conference, Granada, Spain, September 16–20, 2018, Proceedings, Part II. Frangi, A. F., Schnabel, J. A., Davatzikos, C., Alberola-López, C. & Fichtinger, G. (eds.). Springer, p. 750-758 (Lecture notes in computer science, Vol. 11071).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  31. Published

    Multiple hypothesis tracking based extraction of airway trees from CT data: using statistical ranking of template-matched hypotheses

    Selvan, Raghav, Petersen, Jens & de Bruijne, Marleen, 2016. 1 p.

    Research output: Contribution to conference › Poster › Research › peer-review

  32. Published

    PRAGMA-CF. A quantitative structural lung disease CT outcome in young children with cystic fibrosis

    Rosenow, T., Oudraad, M. C. J., Murray, C. P., Turkovic, L., Kuo, W., de Bruijne, Marleen, Ranganathan, S. C., Tiddens, H. A. W. M. & Stick, S. M., 2015, In: American Journal of Respiratory and Critical Care Medicine. 191, 10, p. 1158-1165 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Reply: Excess risk of cancer from computed tomography scan is small but not so low as to be incalculable

    Rosenow, T., Oudraad, M. C. J., Murray, C. P., Turkovic, L., Kuo, W., de Bruijne, Marleen, Ranganathan, S. C., Tiddens, H. A. W. M. & Stick, S. M., 2015, In: American Journal of Respiratory and Critical Care Medicine. 192, 11, p. 1397-1399 3 p.

    Research output: Contribution to journal › Journal article › Research

  34. Published

    Performance of segmentation software on large longitudinal database of pulmonary nodules in the Danish Lung Cancer Screening Trial (DLCST)

    Saghir, Z., Jacobs, C., van Ginneken, B., de Bruijne, Marleen, Dirksen, A. & Pedersen, J. H., 2012, In: European Respiratory Journal. 40, Supplement 56, p. 23s 1 p., P262.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  35. Published

    Probability of malignancy based on automatic segmentation and software measurements of nodules in the Danish lung cancer screening trial (DLCST)

    Saghir, Z., Jacobs, C., van Ginneken, B., de Bruijne, Marleen, Dirksen, A. & Pedersen, J. H., 2012, In: European Respiratory Journal. 40, Supplement 56, p. 777s 1 p., P4185.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  36. Published

    Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations

    SpiroMeta Consortium, S. C., International COPD Genetics Consortium, I. C. G. C. & Understanding Society Scientific Group, U. S. S. G., 2019, In: Nature Genetics. 51, 3, p. 494-505

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Robust shape regression for supervised vessel segmentation and its application to coronary segmentation in CTA

    Schaap, M., van Walsum, T., Neefjes, L., Metz, C., Capuano, E., de Bruijne, Marleen & Niessen, W., 2011, In: IEEE Transactions on Medical Imaging. 30, 11, p. 1974-1986 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Aorta and pulmonary artery segmentation using optimal surface graph cuts in non-contrast CT

    Sedghi Gamechi, Z., Arias-Lorza, A. M., Pedersen, J. H. & de Bruijne, Marleen, 2018, Medical Imaging 2018: Image Processing. SPIE - International Society for Optical Engineering, 7 p. 105742D. (Proceedings of SPIE International Symposium on Medical Imaging, Vol. 10574).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  39. Published

    Automated 3D segmentation and diameter measurement of the thoracic aorta on non-contrast enhanced CT

    Sedghi Gamechi, Z., Bons, L. R., Giordano, M., Bos, D., Budde, R. P. J., Kofoed, Klaus Fuglsang, Pedersen, J. H., Roos-Hesselink, J. W. & de Bruijne, Marleen, 23 Jan 2019, In: European Radiology. 29, 9, p. 4613-4623

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Extracting tree structures in CT data by tracking multiple statistically ranked hypotheses

    Selvan, Raghav, Petersen, Jens, Pedersen, J. H. & de Bruijne, Marleen, 18 Oct 2019, In: Medical Physics. 46, 10, p. 4431-4440

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Graph Refinement based Airway Extraction using Mean-Field Networks and Graph Neural Networks

    Selvan, Raghav, Kipf, T., Welling, M., Juarez, A. G., Pedersen, J. H., Petersen, Jens & de Bruijne, Marleen, 2020, In: Medical Image Analysis. 64, 12 p., 101751.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Optimal CT-technique for the detection of emphysema progression

    Shaker, S. B., Lo, P. C. P., Wigstrom, L., de Bruijne, Marleen & Dirksen, A., 2010.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  43. Published

    Decline in lung density is accelerated in active smokers

    Shaker, S. B., Dirksen, A., Lo, P. C. P., Skovgaard, Lene Theil, de Bruijne, Marleen & Pedersen, J. J. H., 2011. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  44. Published

    Factors influencing the decline in lung density in a Danish lung cancer screening cohort

    Shaker, S. B., Dirksen, A., Lo, P. C. P., Skovgaard, Lene Theil, de Bruijne, Marleen & Pedersen, J. H., 2012, In: European Respiratory Journal. 40, 5, p. 1142-1148 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    The relationship between NT proBNP and CT lung density in long term smokers

    Shaker, S. B., Ashraf, H., Rasmussen, T., Lo, P. C. P., de Bruijne, Marleen, Dirksen, A. & Pedersen, J. H., 2012, In: European Respiratory Journal. 40, Supplement 56, p. 103s 1 p., P652.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  46. Published

    Bicycle Chain Shape Models

    Sommer, Stefan Horst, Tatu, A. J., Chen, C., Jørgensen, D., de Bruijne, Marleen, Loog, M., Nielsen, Mads & Lauze, Francois Bernard, 2009, Computer Vision and Pattern Recognition Workshops, 2009. CVPR Workshops 2009. IEEE Computer Society Conference on Computer Vision and Pattern Recognition.. IEEE, p. 157-163 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  47. Published

    Method of analyzing image for assessing condition of organ e.g. lung of patient represented in image, involves providing quantitative measure of extent of condition in image based on number of identified inspection regions

    Stick, S. M., Rosenow, T., Tiddens, H. A. W. M. & de Bruijne, Marleen, 2016, IPC No. G06T-007/00, Patent No. WO2016183609-A1, 24 Nov 2016, Priority date 20 May 2015, Priority No. AU901841

    Research output: Patent

  48. Published

    Where is VALDO? VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021

    ALFA study, A. S., 2024, In: Medical Image Analysis. 91, 23 p., 103029.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Texture-based analysis of COPD: a data-driven approach

    Sørensen, L., Nielsen, Mads, Lo, P. C. P., Ashraf, H., Pedersen, J. J. H. & de Bruijne, Marleen, 2012, In: I E E E Transactions on Medical Imaging. 31, 1, p. 70-78 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Dissimilarity-based multiple instance learning

    Sørensen, L., Loog, M., Tax, D. M. J., Lee, W., de Bruijne, Marleen & Duin, R. P. W., 2010, Structural, Syntactic, and Statistical Pattern Recognition: Joint IAPR International Workshop, SSPR&SPR 2010, Cesme, Izmir, Turkey, August 18-20, 2010. Proceedings. Hancock, E. R., Wilson, R. C., Windeatt, T., Ulusoy, I. & Escolano, F. (eds.). Springer, p. 129-138 10 p. (Lecture notes in computer science; No. 6218).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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