Sune Darkner

Sune Darkner

Associate Professor

ORCID: 0000-0001-6114-7100

Publication year:
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1 - 25 out of 93Page size: 25
  1. 2024
  2. Published

    An Automatic DWI/FLAIR Mismatch Assessment of Stroke Patients

    Johansen, Jacob, Offersen, C. M., Carlsen, Jonathan Frederik, Ingala, S., Hansen, Adam Espe, Nielsen, Michael Bachmann, Darkner, Sune & Pai, A., 2024, In: Diagnostics. 14, 1, 12 p., 69.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 2023
  4. Published

    A hybrid approach to full-scale reconstruction of renal arterial network

    Xu, Peidi, von Holstein-Rathlou, Niels-Henrik, Søgaard, S. B., Gundlach, C., Sorensen, Charlotte Mehlin, Erleben, Kenny, Sosnovtseva, Olga & Darkner, Sune, 9 May 2023, In: Scientific Reports. 13, 1, 15 p., 7569.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Collision-constrained deformable image registration framework for discontinuity management

    Alscher, Thomas Michael, Erleben, Kenny & Darkner, Sune, 2023, In: PLoS ONE. 18, 8, 15 p., e0290243.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Deep Learning-Assisted Localisation of Nanoparticles in synthetically generated two-photon microscopy images

    Netterstrøm, R., Kutuzov, Nikolay, Darkner, Sune, Pallesen, M. J., Lauritzen, Martin, Erleben, Kenny & Lauze, Francois Bernard, 2023, arXiv.org, 1 p.

    Research output: Working paper › Preprint › Research

  7. Published

    Deep-learning-based segmentation of individual tooth and bone with periodontal ligament interface details for simulation purposes

    Xu, Peidi, Gholamalizadeh, T., nsv780, nsv780, Darkner, Sune & Erleben, Kenny, 2023, In: IEEE Access. 11, p. 102460-102470

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Extremely Weakly-Supervised Blood Vessel Segmentation with Physiologically Based Synthesis and Domain Adaptation

    Xu, Peidi, Lee, B., Sosnovtseva, Olga, Sorensen, Charlotte Mehlin, Erleben, Kenny & Darkner, Sune, 2023, Medical Image Learning with Limited and Noisy Data - 2nd International Workshop, MILLanD 2023, Held in Conjunction with MICCAI 2023, Proceedings. Xue, Z., Antani, S., Zamzmi, G., Yang, F., Rajaraman, S., Liang, Z., Huang, S. X. & Linguraru, M. G. (eds.). Springer, p. 191-201 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Vol. 14307 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  9. Published

    Performance and Agreement When Annotating Chest X-ray Text Reports - A Preliminary Step in the Development of a Deep Learning-Based Prioritization and Detection System

    Li, D., Pehrson, Lea Marie, Bonnevie, R., Fraccaro, M., Thrane, J., Tøttrup, L., Lauridsen, C. A., Balaganeshan, Sedrah Butt, Jankovic, J., Andersen, T. T., Mayar, A., Hansen, Kristoffer Lindskov, Carlsen, Jonathan Frederik, Darkner, Sune & Nielsen, Michael Bachmann, 2023, In: Diagnostics. 13, 6, 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Pseudo-Label Guided Image Synthesis for Semi-Supervised COVID-19 Pneumonia Infection Segmentation

    Lyu, F., Ye, M., Carlsen, J. F., Erleben, Kenny, Darkner, Sune & Yuen, P. C., 2023, In: IEEE Transactions on Medical Imaging. 42, 3, p. 797-809

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    SE(3) Group Convolutional Neural Networks and a Study on Group Convolutions and Equivariance for DWI Segmentation

    Liu, Renfei, Lauze, Francois Bernard, Bekkers, E. J., Erleben, Kenny & Darkner, Sune, 2023, Research Square, 32 p.

    Research output: Working paper › Preprint › Research

  12. Published

    cRedAnno+: Annotation Exploitation In Self-Explanatory Lung Nodule Diagnosis

    Lu, J., Yin, C., Erleben, Kenny, Nielsen, Michael Bachmann & Darkner, Sune, 2023, 2023 IEEE International Symposium on Biomedical Imaging, ISBI 2023. IEEE Computer Society Press, (Proceedings - International Symposium on Biomedical Imaging, Vol. 2023-April).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  13. 2022
  14. Published

    Open-Full-Jaw: An open-access dataset and pipeline for finite element models of human jaw

    Gholamalizadeh, T., nsv780, nsv780, Ferguson, Z., Schneider, T., Panozzo, D., Darkner, Sune, Makaremi, M., Chan, F., Lempel Søndergaard, P. & Erleben, Kenny, 1 Sep 2022, In: Computer Methods and Programs in Biomedicine. 224, 17 p., 107009.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Accuracy and consistency of intensity-based deformable image registration in 4DCT for tumor motion estimation in liver radiotherapy planning

    Tascon-Vidarte, J. D., Stick, L. B., Josipovic, Mirjana, Risum, S., Jomier, J., Erleben, Kenny, Vogelius, Ivan R. & Darkner, Sune, Jul 2022, In: PLoS ONE. 17, 7 July, p. 1-15 e0271064.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Reconstructing Binary Signals from Local Histograms

    Sporring, Jon & Darkner, Sune, 21 Mar 2022, In: Entropy. 24, 3, p. 1-11 433.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    A Direct Geometry Processing Cartilage Generation Method Using Segmented Bone Models from Datasets with Poor Cartilage Visibility

    nsv780, nsv780, Nielsen, M. K., Tascon Vidarte, J. D., Darkner, Sune & Erleben, Kenny, 2022, Computational Biomechanics for Medicine: Towards Translation and Better Patient Outcomes. Springer, p. 155.169

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  18. Published

    An algebra for local histograms

    Sporring, Jon & Darkner, Sune, 2022, In: Frontiers in Computer Science. 4, p. 1-9 939563.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Auto-segmentation of Hip Joints Using MultiPlanar UNet with Transfer Learning

    Xu, Peidi, nsv780, nsv780, Gholamalizadeh, T., Nielsen, Michael Bachmann, Erleben, Kenny & Darkner, Sune, 2022, Medical Image Learning with Limited and Noisy Data: First International Workshop, MILLanD 2022 Held in Conjunction with MICCAI 2022 Singapore, September 22, 2022 Proceedings. Zamzmi, G., Antani, S., Rajaraman, S., Xue, Z., Bagci, U. & Linguraru, M. G. (eds.). Springer Science and Business Media Deutschland GmbH, p. 153-162 10 p. (Medical Image Learning with Limited and Noisy Data, Vol. 13559).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  20. Published

    Bundle geodesic convolutional neural network for diffusion-weighted imaging segmentation

    Liu, Renfei, Lauze, Francois Bernard, Erleben, Kenny, Berg, Rune W. & Darkner, Sune, 2022, In: Journal of Medical Imaging. 9, 6, 14 p., 064002.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Fast Vortex Particle Method for Fluid-Character Interaction

    Meldgaard, A., Darkner, Sune & Erleben, Kenny, 2022, In: OpenReview.net. 2022, 7 p.

    Research output: Contribution to journal › Conference article › Research

  22. Published

    Information-Theoretic Registration with Explicit Reorientation of Diffusion-Weighted Images

    Jensen, H. G., Lauze, Francois Bernard & Darkner, Sune, 2022, In: Journal of Mathematical Imaging and Vision. 64, p. 1-16

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Inter- and Intra-Observer Agreement When Using a Diagnostic Labeling Scheme for Annotating Findings on Chest X-rays—An Early Step in the Development of a Deep Learning-Based Decision Support System

    Li, D., Pehrson, Lea Marie, Tøttrup, L., Fraccaro, M., Bonnevie, R., Thrane, J., Sørensen, P. J., Rykkje, A., Andersen, T. T., Steglich-Arnholm, H., Stærk, D. M. R., Borgwardt, L., Hansen, Kristoffer Lindskov, Darkner, Sune, Carlsen, Jonathan Frederik & Nielsen, Michael Bachmann, 2022, In: Diagnostics. 12, 12, 3112.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    LibHip: An open-access hip joint model repository suitable for finite element method simulation

    nsv780, nsv780, Gholamalizadeh, T., Ferguson, Z., Schneider, T., Nielsen, Michael Bachmann, Panozzo, D., Darkner, Sune & Erleben, Kenny, 2022, In: Computer Methods and Programs in Biomedicine. 226, 14 p., 107140.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Reducing Annotation Need in Self-explanatory Models for Lung Nodule Diagnosis

    Lu, J., Yin, C., Krause, Oswin, Erleben, Kenny, Nielsen, Michael Bachmann & Darkner, Sune, 2022, Interpretability of Machine Intelligence in Medical Image Computing. Reyes, M., Abreu, PH. & Cardoso, J. (eds.). Springer, p. 33-43 (Lecture Notes in Computer Science, Vol. 13611).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  26. Published

    Revisiting Transformer-based Models for Long Document Classification

    Dai, X., Chalkidis, Ilias, Darkner, Sune & Elliott, Desmond, 2022, Findings of the Association for Computational Linguistics: EMNLP 2022. Association for Computational Linguistics, p. 7212–7230

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  27. Published

    RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy

    Smith, Abraham George, Petersen, Jens, Terrones-Campos, C., Berthelsen, A. K., Forbes, N. J., Darkner, Sune, Specht, Lena & Vogelius, I. R., 2022, In: Medical Physics. 49, 1, p. 461-473

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. 2021
  29. Published

    A framework for voxel-based assessment of biological effect after proton radiotherapy in pediatric brain cancer patients using multi-modal imaging

    Skaarup, M., Lundemann, M. J., Darkner, Sune, Jorgensen, M., Marner, Lisbeth, Mirkovic, D., Grosshans, D., Peeler, C., Mohan, R., Vogelius, Ivan R. & Appelt, A., 10 Jun 2021, In: Medical Physics. 48, 7, 12 p., 4110-4121.

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 18038443