Staff – University of Copenhagen

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Department of Computer Science DIKU > Staff

Sune Darkner

Sune Darkner

Assistant professor, Associate Professor

  • Department of Computer Science

    Universitetsparken 5

    2100 København Ø

  • Department of Computer Science

    Universitetsparken 5, 2100 København Ø, Building: 1.09A

    Phone: +45 35 33 57 02Mobile: +45 21 30 85 84

Member of:


  1. 2017
  2. Published

    First-in-man mesenchymal stem cells for radiation-induced xerostomia (MESRIX) : study protocol for a randomized controlled trial. / Cristian, Grønhøj; Jensen, David Hebbelstrup; Glovinski, Peter Viktor; Jensen, Siri Beier; Jensen, Allan Bardow; Oliveri, Roberto Stefan; Specht, Lena; Thomsen, Carsten; Darkner, Sune; Kiss, Katalin; Fischer-Nielsen, Anne; von Buchwald, Christian.

    In: Trials, Vol. 18, 108, 2017.

    Research output: Research - peer-reviewJournal article

  3. E-pub ahead of print

    Collocation for diffeomorphic deformations in medical image registration. / Darkner, Sune; Pai, Akshay Sadananda Uppinakudru; Liptrot, Matthew George; Sporring, Jon.

    In: I E E E Transactions on Pattern Analysis and Machine Intelligence, 21.07.2017.

    Research output: Research - peer-reviewJournal article

  4. Published

    Density-based non-rigid registration of diffusion-weighted images. / Jensen, Henrik Grønholt; Lauze, Francois Bernard; Nielsen, Mads; Darkner, Sune.

    2017. Abstract from 25th ISMRM Annual Meeting, Honolulu, United States.

    Research output: Research - peer-reviewConference abstract for conference

  5. Published

    3D analysis of synaptic vesicle density and distribution after acute foot-shock stress by using serial section transmission electron microscopy. / Khanmohammadi, Mahdieh; Darkner, Sune; Nava, Nicoletta; Nyengaard, J. R.; Wegener, G.; Popoli, M.; Sporring, Jon.

    In: Journal of Microscopy, Vol. 265, No. 1, 2017, p. 101–110.

    Research output: Research - peer-reviewJournal article

  6. Published

    Streamlet Tractography. / Liptrot, Matthew George; Darkner, Sune; Feragen, Aasa; Lauze, Francois Bernard.

    2017. Abstract from 25th ISMRM Annual Meeting, Honolulu, United States.

    Research output: Research - peer-reviewConference abstract for conference

  7. Published

    A statistical model for simultaneous template estimation, bias correction, and registration of 3D brain images. / Pai, Akshay Sadananda Uppinakudru; Sommer, Stefan Horst; Raket, Lars Lau; Kühnel, Line; Darkner, Sune; Sørensen, Lauge; Nielsen, Mads.

    Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging: MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers. ed. / Henning Müller; B. Michael Kelm; Tal Arbel; Weidong Cai; M. Jorge Cardoso; Georg Langs; Bjoern Menze; Dmitris Metaxas; Albert Montillo; William M. Wells; Shaoting Zhang; Albert C. S. Chung; Mark Jenkinson; Annemie Ribbens. Springer, 2017. p. 151-159.

    Research output: Research - peer-reviewArticle in proceedings

  8. Published

    Hippocampal texture predicts rate of cognitive decline in mild cognitive impairment. / Pai, Akshay Sadananda Uppinakudru; Pillai, Jagan A.; Sørensen, Lauge; Darkner, Sune; Sommer, Stefan Horst; Nielsen, Mads.

    In: Alzheimer's & Dementia, Vol. 13, No. 7, supplement, P4-225, 07.2017, p. P1356.

    Research output: ResearchConference abstract in journal

  9. 2016
  10. Published

    Finding significantly connected voxels based on histograms of connection strengths. / Kasenburg, Niklas; Pedersen, Morten Vester; Darkner, Sune.

    Medical Imaging 2016: Image Processing. ed. / Martin A. Styner; Elsa D. Angelini. SPIE - International Society for Optical Engineering, 2016. 978431.

    Research output: Research - peer-reviewArticle in proceedings

  11. Published

    Structural parcellation of the thalamus using shortest-path tractography. / Kasenburg, Niklas; Darkner, Sune; Hahn, Ute; Liptrot, Matthew George; Feragen, Aasa.

    2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI). IEEE, 2016. p. 559-563 7493330.

    Research output: Research - peer-reviewArticle in proceedings

  12. Published

    Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation. / Michalkiewicz, Mateusz Dawid; Pai, Akshay Sadananda Uppinakudru; Leung, Kelvin K.; Sommer, Stefan Horst; Darkner, Sune; Sørensen, Lauge; Sporring, Jon; Nielsen, Mads.

    Medical imaging 2016: Image processing. ed. / Martin A. Styner; Elsa D. Angelini. SPIE - International Society for Optical Engineering, 2016. 978406.

    Research output: Research - peer-reviewArticle in proceedings

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